data net seq Search Results


computational pipeline for ribofr-seq data analyses  (SourceForge net)
90
SourceForge net computational pipeline for ribofr-seq data analyses
Computational Pipeline For Ribofr Seq Data Analyses, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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computational pipeline for ribofr-seq data analyses - by Bioz Stars, 2026-03
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bbmap: short read aligner for dna and rna-seq data.  (SourceForge net)
90
SourceForge net bbmap: short read aligner for dna and rna-seq data.
Bbmap: Short Read Aligner For Dna And Rna Seq Data., supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bbmap: short read aligner for dna and rna-seq data./product/SourceForge net
Average 90 stars, based on 1 article reviews
bbmap: short read aligner for dna and rna-seq data. - by Bioz Stars, 2026-03
90/100 stars
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gene prediction (hmm-based) using both rna-seq data and genome sequence  (SourceForge net)
90
SourceForge net gene prediction (hmm-based) using both rna-seq data and genome sequence
Gene Prediction (Hmm Based) Using Both Rna Seq Data And Genome Sequence, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/gene prediction (hmm-based) using both rna-seq data and genome sequence/product/SourceForge net
Average 90 stars, based on 1 article reviews
gene prediction (hmm-based) using both rna-seq data and genome sequence - by Bioz Stars, 2026-03
90/100 stars
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python-based suite to process raw rna-seq or exome-seq data for customized database construction  (SourceForge net)
90
SourceForge net python-based suite to process raw rna-seq or exome-seq data for customized database construction
Python Based Suite To Process Raw Rna Seq Or Exome Seq Data For Customized Database Construction, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/python-based suite to process raw rna-seq or exome-seq data for customized database construction/product/SourceForge net
Average 90 stars, based on 1 article reviews
python-based suite to process raw rna-seq or exome-seq data for customized database construction - by Bioz Stars, 2026-03
90/100 stars
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computational pipeline for processing o2n-seq data  (SourceForge net)
90
SourceForge net computational pipeline for processing o2n-seq data
Computational Pipeline For Processing O2n Seq Data, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/computational pipeline for processing o2n-seq data/product/SourceForge net
Average 90 stars, based on 1 article reviews
computational pipeline for processing o2n-seq data - by Bioz Stars, 2026-03
90/100 stars
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pipeline for rna-seq data analysis (prada)  (SourceForge net)
90
SourceForge net pipeline for rna-seq data analysis (prada)
Pipeline For Rna Seq Data Analysis (Prada), supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pipeline for rna-seq data analysis (prada)/product/SourceForge net
Average 90 stars, based on 1 article reviews
pipeline for rna-seq data analysis (prada) - by Bioz Stars, 2026-03
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rna-seq raw data fastq files  (SourceForge net)
90
SourceForge net rna-seq raw data fastq files
<t>RNA-seq</t> analysis and validation of DE genes specific to StMSI1-OE or StBMI1-1-AS line. A, Venn diagram shows the summary of DE genes in StMSI1-OE and StBMI1-AS lines compared to VC line. B and C, Validation of selective StMSI1-specific (B) and StBMI1-1-specific genes (C) compared to VC. The relative fold-change of respective gene expression in StMSI1-OE or StBMI1-1-AS lines was calculated with respect to its transcript level in VC plant. Student’s t test was performed to check significance with *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001. ns, not significant. Error bars represent ± sd from three biological and three technical replicates. EIF3e was used as a reference gene.
Rna Seq Raw Data Fastq Files, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna-seq raw data fastq files - by Bioz Stars, 2026-03
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simulated and pre-processed chip-seq data  (SourceForge net)
90
SourceForge net simulated and pre-processed chip-seq data
<t>RNA-seq</t> analysis and validation of DE genes specific to StMSI1-OE or StBMI1-1-AS line. A, Venn diagram shows the summary of DE genes in StMSI1-OE and StBMI1-AS lines compared to VC line. B and C, Validation of selective StMSI1-specific (B) and StBMI1-1-specific genes (C) compared to VC. The relative fold-change of respective gene expression in StMSI1-OE or StBMI1-1-AS lines was calculated with respect to its transcript level in VC plant. Student’s t test was performed to check significance with *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001. ns, not significant. Error bars represent ± sd from three biological and three technical replicates. EIF3e was used as a reference gene.
Simulated And Pre Processed Chip Seq Data, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/simulated and pre-processed chip-seq data/product/SourceForge net
Average 90 stars, based on 1 article reviews
simulated and pre-processed chip-seq data - by Bioz Stars, 2026-03
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Image Search Results


RNA-seq analysis and validation of DE genes specific to StMSI1-OE or StBMI1-1-AS line. A, Venn diagram shows the summary of DE genes in StMSI1-OE and StBMI1-AS lines compared to VC line. B and C, Validation of selective StMSI1-specific (B) and StBMI1-1-specific genes (C) compared to VC. The relative fold-change of respective gene expression in StMSI1-OE or StBMI1-1-AS lines was calculated with respect to its transcript level in VC plant. Student’s t test was performed to check significance with *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001. ns, not significant. Error bars represent ± sd from three biological and three technical replicates. EIF3e was used as a reference gene.

Journal: Plant Physiology

Article Title: PcG Proteins MSI1 and BMI1 Function Upstream of miR156 to Regulate Aerial Tuber Formation in Potato 1 [OPEN]

doi: 10.1104/pp.19.00416

Figure Lengend Snippet: RNA-seq analysis and validation of DE genes specific to StMSI1-OE or StBMI1-1-AS line. A, Venn diagram shows the summary of DE genes in StMSI1-OE and StBMI1-AS lines compared to VC line. B and C, Validation of selective StMSI1-specific (B) and StBMI1-1-specific genes (C) compared to VC. The relative fold-change of respective gene expression in StMSI1-OE or StBMI1-1-AS lines was calculated with respect to its transcript level in VC plant. Student’s t test was performed to check significance with *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001. ns, not significant. Error bars represent ± sd from three biological and three technical replicates. EIF3e was used as a reference gene.

Article Snippet: RNA-seq raw data FASTQ files ( http://maq.sourceforge.net/fastq.shtml ) generated from this study were deposited and available at the National Centre for Biotechnology Information Sequence Read Archive ( https://www.ncbi.nlm.nih.gov/sra ) under accession number PRJNA546591.

Techniques: RNA Sequencing Assay, Expressing